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Spherical\ncoordinates are transformed to radians, and optionally shifted by pi /\n2 to account for differences in coordinate conventions in different\nparts of Salvus.","return_description":"The coordinates in their internal form.","return_type_hint":"npt.NDArray","parameters":[{"name":"cs","description":"The coordinate system.","type_hint":"CoordinateSystem","default_value":null},{"name":"coords","description":"The coordinates.","type_hint":"npt.NDArray","default_value":null},{"name":"shift_longitude_pi_2","description":"Subtract pi/2 to the longitude coordinate after conversion to radians. Only relevant for 2-D spherical systems.","type_hint":"bool","default_value":"False"},{"name":"convert_to_colat","description":"Convert latitude values (-90.0 to +90.0 degrees) to colatitude values (0.0 to +180.0 degrees).","type_hint":"bool","default_value":"False"}],"exceptions":null},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.compute_elevation","name":"compute_elevation","signature":"def compute_elevation(\n    elevation: float | _interface.Depth | _interface.Height,\n    e_bot: float | None,\n    e_top: float | None,\n) -> float | _interface.Depth | _interface.Height: ...","description":"Realize a relative elevation into an absolute elevation.\n\nAbsolute coordinates are passed-through.","return_description":"The realized elevation.","return_type_hint":"float | _interface.Depth | _interface.Height","parameters":[{"name":"elevation","description":"The elevation value to transform.","type_hint":"float | _interface.Depth | _interface.Height","default_value":null},{"name":"e_bot","description":"The elevation of the bottom of the domain.","type_hint":"float | None","default_value":null},{"name":"e_top","description":"The elevation of the top of the domain.","type_hint":"float | None","default_value":null}],"exceptions":[{"name":"ValueError","description":"If the elevation cannot be realized."}]},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.is_full_sphere","name":"is_full_sphere","signature":"def is_full_sphere(\n    db: _domain.DomainBounds, cs: CoordinateSystem, i_bot: _interface.Interface\n) -> bool: ...","description":"Returns true if the domain represents a full sphere.","return_description":"Whether the domain represents a full sphere.","return_type_hint":"bool","parameters":[{"name":"db","description":"The domain bounds.","type_hint":"_domain.DomainBounds","default_value":null},{"name":"cs","description":"The coordinate system.","type_hint":"CoordinateSystem","default_value":null},{"name":"i_bot","description":"The bottom interface (which may signify radius == 0).","type_hint":"_interface.Interface","default_value":null}],"exceptions":null},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.is_full_spherical_shell","name":"is_full_spherical_shell","signature":"def is_full_spherical_shell(\n    bounds: _domain.DomainBounds | dict[str, tuple[float, float]],\n    cs: CoordinateSystem,\n) -> bool: ...","description":"Returns true if the domain represents a full spherical shell.","return_description":"Whether the domain represents a full spherical shell.","return_type_hint":"bool","parameters":[{"name":"bounds","description":"The domain bounds.","type_hint":"_domain.DomainBounds | dict[str, tuple[float, float]]","default_value":null},{"name":"cs","description":"The coordinate system.","type_hint":"CoordinateSystem","default_value":null}],"exceptions":null},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.realize_domain","name":"realize_domain","signature":"def realize_domain(\n    d: T, t_ref: _interface.Interface, b_ref: _interface.Interface\n) -> T: ...","description":"'Realize' a domain by resolving any non-absolute coordinates.\n\nDomains can sometimes have extents that are specified at a later point than\ndomain creation. For instance, domains can have top and bottom bounds of\ninfinity, which instructs the mesher to realize the maximum and minimum\nvertical coordinates to those specified by the top / bottom interfaces.\n\nIf the coordinates of a relevant interface are relative, and the domain top\n/ bottom is not yet defined, an exception will be raised.","return_description":"A domain bounds object with absolute coordinates.","return_type_hint":"T","parameters":[{"name":"d","description":"The domain to realize.","type_hint":"T","default_value":null},{"name":"t_ref","description":"The reference coordinate of the top interface.","type_hint":"_interface.Interface","default_value":null},{"name":"b_ref","description":"The reference coordinate of the bottom interface.","type_hint":"_interface.Interface","default_value":null}],"exceptions":null},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.realize_interface","name":"realize_interface","signature":"def realize_interface(\n    interface: _interface.Interface, bounds: _domain.DomainBounds\n) -> _interface.Interface: ...","description":"Realize an interface to ensure it is suitable for further processing.\n\nRealization here refers to ensuring that the xarray representation of the\ninterface contains all the dimensions that are expected given the\ndimensions of the domain, that any relative reference coordinates are\ntransformed to absolute coordinates, and that the interface has an extent\nthat is great enough to cover the bounds of the domain.","return_description":"A realized interface which spans the domain bounds.","return_type_hint":"_interface.Interface","parameters":[{"name":"interface","description":"The interface to realize.","type_hint":"_interface.Interface","default_value":null},{"name":"bounds","description":"The bounds of the realized domain.","type_hint":"_domain.DomainBounds","default_value":null}],"exceptions":null},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.realize_interfaces","name":"realize_interfaces","signature":"def realize_interfaces(\n    domain: _domain.Domain, layered_model: _layered_model.LayeredModel\n) -> _layered_model.LayeredModel: ...","description":"Realize all interfaces in a model.\n\nDoes not realize materials, or check for consistency of layering.","return_description":"A new layered model with the interfaces realized.","return_type_hint":"_layered_model.LayeredModel","parameters":[{"name":"domain","description":"The domain to realize from.","type_hint":"_domain.Domain","default_value":null},{"name":"layered_model","description":"The layered model containing the interfaces to realize.","type_hint":"_layered_model.LayeredModel","default_value":null}],"exceptions":null},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.realize_layered_model","name":"realize_layered_model","signature":"def realize_layered_model(\n    domain: T, layered_model: _layered_model.LayeredModel\n) -> tuple[T, _layered_model.LayeredModel]: ...","description":"Realize a layered model and domain simultaneously.\n\nRealization of a domain and associated layered model are dependent on each\nother, as the domain bounds may be set by the domain itself, or the extrema\nof the layered model, (or both -- in which case a conflict will be detected\nand an exception raised). This function serves as the top-level entry point\nto the realization process and will sequentially realize the domain and\nlayered model accordingly. As a result, a realized domain and realized\nlayered model will be returned, which will be guaranteed to only hold\nabsolute elevation values.\n\nNote that this process does _not_ transform models parameterized using\nrelative coordinates to a parameterization based on absolute coordinates,\nas that process requires a mesh to complete. However, any materials\ncontaining parameters with relative coordinates will still be returned with\nproper extrusions along all relevant axes, and with relative elevations\nrealized.","return_description":"A tuple comprised of the realized domain and the realized layered model.","return_type_hint":"tuple[T, _layered_model.LayeredModel]","parameters":[{"name":"domain","description":"The domain to realize.","type_hint":"T","default_value":null},{"name":"layered_model","description":"The layered model to realize.","type_hint":"_layered_model.LayeredModel","default_value":null}],"exceptions":null},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.realize_layered_model_ab","name":"realize_layered_model_ab","signature":"def realize_layered_model_ab(\n    d: _domain.Domain,\n    lm: _layered_model.LayeredModel,\n    mesh_resolution: types.MeshResolution,\n    oracle_filter: typing.Sequence[filters.OracleFilter],\n    ab_params: basic_mesh.AbsorbingBoundaryParameters | None,\n) -> tuple[\n    _domain.Domain,\n    _layered_model.LayeredModel,\n    list[_pd.RealizedParameter],\n    list[str],\n    float,\n]: ...","description":"Extrude a realized layered model to respect absorbing boundary layers.\n\nThe extrusion logic for absorbing boundary layers is somewhat complex --\nfor example we must recursively realize and extrude to ensure that\nconsistent extrusion behavior is maintained even when nD materials contain\nvariations within the extrusion layers. The current complexity is also\naffected by the need to match legacy behavior, which conditionally extrudes\nby an additional element edge depending on the domain and axis under\nconsideration.","return_description":"A tuple containing:     - The realized domain, extruded to account for absorbing         boundaries.     - The realized layered model, extruded to account for absorbing         boundaries.     - A list of (potentially volumetric) minimum wavelengths,         encapsulated within the relevant RealizedParameter class.     - A list of side set names that should be marked as absorbing.","return_type_hint":"tuple[_domain.Domain, _layered_model.LayeredModel, list[_pd.RealizedParameter], list[str], float]","parameters":[{"name":"d","description":"The realized domain.","type_hint":"_domain.Domain","default_value":null},{"name":"lm","description":"The layered model.","type_hint":"_layered_model.LayeredModel","default_value":null},{"name":"mesh_resolution","description":"The mesh resolution.","type_hint":"types.MeshResolution","default_value":null},{"name":"oracle_filter","description":"The oracle filtered.","type_hint":"typing.Sequence[filters.OracleFilter]","default_value":null},{"name":"ab_params","description":"Parameters governing absorbing boundary extrusion.","type_hint":"basic_mesh.AbsorbingBoundaryParameters | None","default_value":null}],"exceptions":null},{"qualified_name":"salvus.mesh.layered_meshing.detail.realize.realize_material","name":"realize_material","signature":"def realize_material(\n    top_interface: _interface.Interface,\n    material: Material,\n    bot_interface: _interface.Interface,\n    domain: _domain.Domain,\n) -> Material: ...","description":"Realize a material to ensure it is suitable for further processing.\n\nRealization here refers to transforming material parameters parametrized\nusing relative coordinates (i.e. depth, or height) or generic coordinates\n(i.e. `v` for vertical) to absolute coordinates with proper dimension\nnames. The will result for, in 2-D Cartesian domains, `v` being mapped to\n`y`, and depths / heights being transformed to absolute vertical\ncoordinates using the domain bounds as a reference.\n\nWhat will _not_ be transformed is the vertical coordinate value of\n`v_relative`. This is a special dimension name that will be realized later\non in the meshing process, once the discrete boundaries or a layer are\nknown.","return_description":"A realized material which spans the domain bounds.","return_type_hint":"Material","parameters":[{"name":"top_interface","description":"The top realized interface of the material's layer.","type_hint":"_interface.Interface","default_value":null},{"name":"material","description":"The material.","type_hint":"Material","default_value":null},{"name":"bot_interface","description":"The bottom realized interface of the material's layer.","type_hint":"_interface.Interface","default_value":null},{"name":"domain","description":"The realized 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